1.      Macroevolution

2.      Quantitative paleontology and stratigraphy

3.      Morphometrics

4.      Micropaleontology, especially fusulinid foraminifera

History of life I (for undergraduates, 2018-)

Paleobiology (for undergraduates and graduates, 2017-)

Reading upon On the origin of species (for undergraduates, 2022-)

Critical Reading of Scientific articles (for graduates, 2021-)

1.Xu, H.Q., Zhao Y.Y., Huang, H.*, Dong, S.C., Shi, Y.K., Huang, C.J., Wu, H.C., Qian, Z.Q., Fang, Q., Wen, H.G., Su, Z.T., Dai, S., Wang, R.H., Li, C., Sun, C., Fan, J.X.*, in press. A comprehensive construction of the domain ontology for stratigraphy. Geoscience Frontiers, 101461. https://doi.org/10.1016/j.gsf.2022.101461

2.宋思存，张子航，史宇坤*. 2022. 定量古生物学常用Q型多变量线性回归方法例析. 微体古生物学报，39(2)：190-199.

3.Huang, H., Jin, X. C., Shi, Y.K. 2022. Distribution pattern of Middle Permian fusulinids in the Lhasa Block, Tibet and their paleogeographic implications. Palaeogeography, palaeoclimatology, palaeoecology. 586:110780.

4.史宇坤，许姝艺，董少春. 2022. 基于知识图谱的增强型混合式教学法的教学实践与思考，高校地质学报，28(6): 387-393.

5.宋思存，张书涵，张子航，史宇坤*. 2021. 定量古生物学常用R型多变量线性回归方法例析. 微体古生物学报，38(3)：292-300.

6.文蝶, 黄浩, 史宇坤*, 杨孙容, 杨娇, 王媛，侯旭东，樊隽轩. 2021. 地球科学大数据的管理与共享:以英国地质调查局为例. 高校地质学报, 27(1)：045-057.

7.Deng, Y. Y., Fan, J. X.*, Zhang, S.H., Fang, X., Chen, Z.Y., Shi, Y.K. *, Wang, H. W., Wang, X. B., Yang, J., Hou, X.D., Wang, Y., Zhang, Y.D., Chen, Q., Yang, A. H., Fan, R., Dong, S.C., Xu, H.Q., Shen, S.Z., 2021. Timing and patterns of the Great Ordovician Biodiversification Event and Late Ordovician mass extinction. Earth-Science Reviews, 220, 103743.

8.Shi, Y. K., Wang, X. D., Fan, J. X., Huang, H., Xu, H. Q., Zhao, Y. Y., Shen, S. Z. 2021. Carboniferous-earliest Permian marine evolutionary biodiversification event (CPBE) during the Late Paleozoic Ice Age. Earth-Science Reviews, 220，p. 103699.

9.Wang, Xiangdong*, Hu, Keyi*, Shi, Yukun*, Chen, Jitao, Yang, Sunrong, Ye, Xunyan, Li, Xiaoming, Song, Yyingfan, Chen, Bo, Chang, Xiaolin，Yao, Le, Zhang, Yichun, Fan, Junxuan, Shen, Shuzhong. 2021. The missing upper Carboniferous in the Cimmerian continent: A critical review. Earth-Science Reviews, 217, p.103627.

10.Yining Chen, Yukun Shi*, Silong Huang, 2021. Species-Specific Settling Behaviors of Benthic Foraminifera: Size, Density and Structure. Journal of Foraminiferal Research 51 (2): 69–80. doi: https://doi.org/10.2113/gsjfr.51.2.69

11.Yukun Shi. 2021. Heterochronic origin of spherical fusulinid foraminifera in the late Paleozoic. Paleobiology 47(1): 115-133.

12.Wang, W.Q., Katchinoff, J.A., Garbelli, C., Immenhauser, A., Zheng, Q.F., Zhang, Y.C., Yuan, D.X., Shi, Y.K., Wang, J., Planavsky, N. and Shen, S.Z., 2021. Revisiting the Permian seawater 87Sr/86Sr record: New perspectives from brachiopod proxy data and stochastic oceanic box models. Earth-Science Reviews, 103679.

13.邓怡颖, 樊隽轩, 王玥, 史宇坤, 杨娇，鲁铮博，2020. 古生物学数据库现状与数据驱动下的科学研究. 高校地质学报, 26(4)：361-383.

14.鲁铮博, 史宇坤*, 华洪, 拓守廷, 叶训焱，邓怡颖，樊隽轩，2020. 国际大洋科学钻探的数据资源与共享现状，高校地质学报，26(4)：472-480.

15.黄明立，田坤烜，史宇坤*，2020. 滇黔桂盆地早二叠世亚丁斯克期的沉积环境分异与䗴有孔虫响应，地学前缘，27（6）：1-16.

16.Wang, W. Q., Garbelli, C., Zhang, F. F., Zheng, Q. F., Zhang, Y. C., Yuan, D. X., Shi, Y. K., Chen, B., Shen, S. Z., 2020. A high-resolution Middle to Late Permian paleotemperature curve reconstructed using oxygen isotopes of well-preserved brachiopod shells. Earth and Planetary Science Letters, 540, 116245.

17.Yan, Zhen, Jianbo Liu, Xiaochi Jin, Yukun Shi, Kunxuan Tian, and Haifeng Wang. 2020. Evolution pattern of early Permian carbonate buildups: With reference to the carbonate mounds in eastern Inner Mongolia, North China. Sedimentary Geology: 105775.

18.Hao Huang, Xiaochi Jin, Yukun Shi, Haifeng Wang, Jianbin Zheng, and Pu Zong. 2020. Fusulinid-bearing oolites from the Tengchong Block in western Yunnan, China: Early Permian warming signal in eastern peri-Gondwana. Journal of Asian Earth Sciences 193:104307。

19.Hao Huang, Xiaochi Jin, Yukun Shi. 2020. Permian Fusulinid Rugososchwagerina (Xiaoxinzhaiella) from the Shan Plateau, Myanmar: Systematics and Paleogeography. Journal of Foraminiferal Research, 50 (1): 11–24. doi: https://doi.org/10.2113/gsjfr.50.1.11

20.Fan, J., Shen, S., Erwin, D. H., Sadler, P. M., MacLeod, N., Cheng, Q., Hou, X., Yang, J., Wang, X., Wang, Y., Zhang, H., Chen, X., Li, G., Zhang, Y., Shi, Y., Yuan, D., Chen, Q., Zhang, L., Li, C. and Zhao, Y. 2020. A high-resolution summary of Cambrian to Early Triassic marine invertebrate biodiversity. Science 67(6475):272-277. https://science.sciencemag.org/content/367/6475/272

21.Yan, Z., Liu, J., Jin, X., Yukun Shi, and Wang, H., 2019. Construction model and paleogeographic distribution of Late Pennsylvanian phylloid algal–microbial reefs: A case study in eastern Inner Mongolia, North China. Sedimentary geology, 383, pp.181-194.

22.Yukun Shi, Hao Huang, Zonghang Shen, 2019. New insights for ancient foraminifera through 3D visuals of fusulinids. Palaeoworld, 28(4): 478-486.

23.田坤烜，史宇坤*，闫振，2019. 内蒙古苏尼特右旗德言其庙剖面二叠纪䗴类动物群，微体古生物学报, 36(3): 232-250.

24.陈龙，黄明立，史宇坤*，2019. 底栖有孔虫壳体微量元素地球化学指标及其“生命效应”，微体古生物学报，2019，36（2）：103-114

25.宫巨嵩, 史宇坤*, 2017. 现代大型底栖有孔虫壳体地球化学元素的原位微区分析. 微体古生物学报 34，291-301.

26.史宇坤, 2017. 形态测量学（Morphometrics）常用方法及其在微体古生物学中的应用. 微体古生物学报, 34(2): 179-191.

27.Shi, Y., Huang, H. and Jin, X., 2017, Depauperate fusulinid faunas of the Tengchong Block in western Yunnan, China, and their paleogeographic and paleoenvironmental indications: Journal of Paleontology 91:12-24.

28.Huang, H., Shi, Y.-K. and Jin, X.-C., 2017, Permian (Guadalupian) fusulinids of Bawei Section in Baoshan Block, western Yunnan, China: Biostratigraphy, facies distribution and paleogeographic discussion: Palaeoworld 26:95-114.

29.Shi, Y. K. and Macleod, N., 2016, Identification of life-history stages in fusulinid foraminifera: Marine Micropaleontology, v. 122, p. 87-98.

30.樊隽轩, **, 泮燕红, 史宇坤, 陈中阳, 陈清, 张琳娜，杨娇, 2016, 定量古生物学及重要名词释义。古生物学报55（2）：220-243.

31.Hao Huang, Yukun Shi, Xiaochi Jin. 2015. Permian fusulinid biostratigraphy of the Baoshan Block in western Yunnan, China with constraints on paleogeography and paleoclimate. Journal of Asian Earth Sciences, 104:127-144.

32.Hao Huang, Xiaochi Jin, Yukun Shi. 2015. A Verbeekina assemblage (Permian fusulinid) from the Baoshan Block in western Yunnan, China. Journal of Paleontology, 89(2): 269-280.

33.Jin, X., Huang, H., Shi, Y. and Zhan, L., 2015, Origin of Permian exotic limestone blocks in the Yarlung Zangbo Suture Zone, Southern Tibet, China: with biostratigraphic, sedimentary and regional geological constraints: Journal of Asian Earth Sciences, v. 104, p. 22-38.

34.李世毅, 姜迪, 赵莹莹, 胡修棉, 史宇坤, 2015, 安徽巢湖地区石炭纪-早二叠世碳酸盐岩微相与沉积环境。沉积与特提斯地质35（1）：3-15.

35.史宇坤，杨湘宁，刘家润。2012。贵州南部宗地地区早石炭世-早二叠世的䗴类。北京：科学出版社。271页。

36.Yukun SHI，Hao Huang , Xiaochi Jin , Xiangning Yang. 2011. Early Permian fusulinids from the Baoshan Block, western Yunnan, China. Journal of Paleontology. 85(3): 489-501.

37.Jin Xiaochi, Huang Hao, Shi Yukun, Zhan Lipei. 2011. Lithologic boundaries in Permian post-glacial sediments of the Gondwana-affinity regions of China: typical sections, age range and correlation. Acta Geologica Sinica, 85(2): 373–386.

38.吴聪，史宇坤，胡修棉，2011. 藏南定日上白垩统平行不整合界线及其浮游有孔虫时代约束. 微体古生物学报 28(4): 381-402.

39.Yukun SHI, Xiangning Yang, Hao Huang, 2009. Differences between subfamilies in diversification process of the Early and Middle Permian fusulinid fauna in South China. Palaeoworld 18: 34-40.

40.史宇坤，刘家润，杨湘宁，朱李鸣，2009. 贵州省紫云县宗地剖面早石炭世大塘期－早二叠世栖霞期的䗴类动物群. 微体古生物学报26(1): 1-30.

41.Huang Hao, Jin Xiaochi, Shi Yukun, Yang Xiangning. 2009. Middle Permian western Tethyan fusulinids from southern Baoshan Block, western Yunnan, China. Journal of Paleontology, 83: 880-896. (SCI)

42.Yukun SHI，Xiaochi Jin , Hao Huang , Xiangning Yang, 2008. Permian fusulinids from the Tengchong Block, western Yunnan, China. Journal of Paleontology 82(1): 118-127. (SCI)

43.黄浩, 金小赤，史宇坤，杨湘宁，2007. 西藏申扎地区中二叠世䗴类动物群. 古生物学报46(1): 62-74.

44.SHI Yukun, YANG Xiangning, 2005. A statistical test on diversity changes of Early and Middle Permian fusulinacean fauna in South China. Science in China Series D-Earth Sciences 48(7):978-984. (SCI)

45.史宇坤，杨湘宁，金小赤，2005. 滇西耿马县小新寨中二叠世沙子坡组“Rugososchwagerina”的再研究. 古生物学报44（4）：535-544.

46.史宇坤，杨湘宁，刘家润，董琳，朱李鸣，林春明，2004. 贵州紫云县宗地乡下二叠统隆林阶生物地层初步研究. 地层学杂志28(4)：326-330.

47.杨湘宁，史宇坤朱李鸣，殷小龙，2003. 华南早中二叠世䗴类分异度变化过程的对比研究. 古生物学报42(4): 517-524.

48.殷小龙, 杨湘宁, 朱李鸣，史宇坤，2003. 西南地区早—中二叠世䗴类复合标准序列的建立及初步研究. 地层学杂志27(2): 150-158.

担任专辑编辑：

Guest associate editor, Abstracts of Deep-time Digital Earth Forum, Acta Geologica Sinica (in English), 2019，93（S1）:1-180. Beijing, China. (ISSN 1000-9515)

特邀主编，深时数字地球专辑：地球科学大数据I、II, 2020-2021, 高校地质学报, Nanjing, China. (in Chinese with English abstract)

科普作品：

1.Yukun Shi, 2020. Supercomputer-assisted algorithm discovers previously unknown high-resolution species diversification. Nature ecology & evolution community. https://natureecoevocommunity.nature.com/users/345905-yukun-shi/posts/58842-supercomputer-assisted-algorithm-discovers-previously-unknown-high-resolution-species-diversification

2.史宇坤，2020. 意大利金钉子科考记（下篇），科学世界4期，p. 94-99.

3.史宇坤，2020. 意大利金钉子科考记（上篇），科学世界3期，p. 92-97.

4.2021 CGTN《多样之境》（参与）

5.2020 北京新京报我们视频、中科院南古所、南京大学《行走两亿年》（参与）