- Shi, Y. J., Shi, Y. K.*, Yang, A. H.*, Huang, H. H., Deng, Y. Y., Lu, Z. B., Zhou, X. H., Cui, Y. C., Yuan, J. L., Fan, J. X., 2026. Miaolingian-Furongian (Cambrian) high-resolution marine species richness patterns of the North China Block. Global and Planetary Change, 259: 105346. https://doi.org/10.1016/j.gloplacha.2026.105346
- Stephenson, M. H., Shen, S. Z., Fan, J. X., Hu, L. S., Qi, J., 2026. Effect of steep climate gradient on palynological assemblages on the Arabian part of the Tethys shore in two Carboniferous-Permian ice age time slices. Review of Palaeobotany and Palynology, 344(2026): 105448. https://doi.org/10.1016/j.revpalbo.2025.105448
- Zhang, S. H.1, Zhao, Y. Y. 1, Shi, Y. K.*, Fang, Q., Wang, X. D., Fan, J. X., Zhang, Y. C., Yuan, D. X., Wang, Y., Zhang, F. F., Wu, H. C., Erwin, D. H., Marshall, C. R., Shen, S. Z.* 2025. Global cooling drove diversification and warming caused extinction among Carboniferous-Permian fusuline foraminifera. Science Advances, 11(25): eadv2549. https://doi.org/10.1126/sciadv.adv2549
- Benson, R. B. J.*, Close, R. A.*, Antell, G. T., Whittaker, R. J., Valdes, P., Farnsworth, A., Lunt, D. J., Shen, S. Z., Fan, J. X., Saupe, E. E., 2025. Marine animal diversity across latitudinal and temperature gradients during the Phanerozoic. Palaeontology, 68(3):e70006 https://doi.org/10.1111/pala.70006
- Tang, Q.*, Zheng, W. T., Zhang, S. H., Fan, J. X., Riedman, L. A., Hou, X. D., Muscente, A. D., Bykova, N., Sadler, P. M., Wang, X. D., Zhang, F. F., Yuan, X. L., Zhou, C. M., Wan, B., Pang, K.*, Ouyang, Q., McKenzie, R., Zhao, G. C., Shen, S. Z.*, Xiao, S. H.*, 2024. Quantifying the global biodiversity of Proterozoic eukaryotes. Science, 386: eadm9137.
- Deng, Y. Y., Fan, J. X.*, Yang, S. C., Shi, Y. K., Lu, Z. B., Xu, H. Q., Sun, Z. Y., Zhao, F. Q., Hou, Z. S., 2023. No Furongian Biodiversity Gap: Evidence from South China. Palaeogeography, Palaeoclimatology, Palaeoecology, 618: 111492 https://doi.org/10.1016/j.palaeo.2023.111492
- Deng, Y.Y., Fan, J.X.*, Zhang, S.H., Fang, X., Chen, Z.Y., Shi, Y.K.*, Wang, H.W., Wang, X.B., Yang, J., Hou, X.D., Wang, Y., Zhang, Y.D., Chen, Q., Yang, A.H., Fan, R., Dong, S.C., Xu, H.Q., Shen, S.Z., 2021. Timing and patterns of the Great Ordovician Biodiversification Event and Late Ordovician mass extinction: Perspectives from South China. Earth-Science Reviews, 220: 103743. https://doi.org/10.1016/j.earscirev.2021.103743
- Shi, Y. K.*, Wang, X. D., Fan, J. X., Huang, H., Xu, H. Q., Zhao, Y. Y., Shen, S. Z. 2021. Carboniferous-earliest Permian marine evolutionary biodiversification event (CPBE) during the Late Paleozoic Ice Age. Earth-Science Reviews, 220: 103699. https://doi.org/10.1016/j.earscirev.2021.103699
- Zhang, S. H.*, Fan, J.X., Morgan, C.A., Henderson, C.M., Shen, S.Z.*, 2021. Quantifying the middle–late Cambrian trilobite diversity pattern in South China. Palaeogeography, Palaeoclimatology, Palaeoecology, 570: 110361. https://doi.org/10.1016/j.palaeo.2021.110361
- Yang, S.C., Algeo, T.J., Servais, T., Martin, R.E., Harper, D.A.T., Marshall, C.R., Deng, Y.Y., Sun, Z.Y., Lu, Z.B., Cao, J., Li, C., Shen, S.Z., Montañez, I.P.*, Fan, J.X.*, 2026. Co-evolution of marine ecosystems and nutrient cycles during the Great Ordovician Biodiversification Event. Earth and Planetary Science Letters, 686, 120043. https://doi.org/10.1016/j.epsl.2026.120043
- Yang, S. C.*, Fan, J. X.*, Li, C., Lin, Y.B., Deng, Y.Y., Sun, Z.Y., Cao, J., Shen, S.Z., 2026. Enhanced marine primary productivity during the long-term Ordovician cooling: A barium isotope perspective from South China. Earth and Planetary Science Letters, 675, 119783. https://doi.org/10.1016/j.epsl.2025.119783
- Yang, S. C.*, Fan, J. X.*, 2025. Decreased marine organic carbon burial during the Hirnantian glaciation. Earth and Planetary Science Letters, 654: 119240. https://doi.org/10.1016/j.epsl.2025.119240
- Yang, S. C., Fan, J. X.*, Rasmussen, C. M., Wang, X. L., Sun, Z. Y., Deng, Y. Y., 2024. Globally synchronous meteorite rain during the Middle Ordovician. Palaeogeography, Palaeoclimatology, Palaeoecology, 655, 112550.
- Yang, S. C., Fan, J. X.*, Algeo, T. J., Shields, G. A., Zhou, Y., Li, C.*, Chen, J. T., Li, W. Q., Li, N., Cao, J., Zhang, L. N., Sun, Z. Y., Shen, S. Z. 2024. Steep oceanic DIC δ13C depth gradient during the Hirnantian Glaciation. Earth-Science Reviews, 255 (2024) 104840. https://doi.org/10.1016/j.earscirev.2024.104840
- Sun, Z. Y., Zhao, F. Q., Melchin, M. J., Fan, J. X.*, Zhang, B. L., Jin, X., Zhang, Z. H., Yang, S. C., Chen, Q., Deng, Y. Y., Zhang, L. N. 2023. A high-resolution record of the late Hirnantian to Aeronian marine redox change in South China and its relationship with the record of graptolite biodiversity. Palaeogeography, Palaeoclimatology, Palaeoecology, 629: 111793. https://doi.org/10.1016/j.palaeo.2023.111793
- Fang, Q., Wu, H. C.*, Shen, S. Z., Fan, J. X., Hinnov, L. A., Yuan, D. X., Ren, C. Z., Zhou, M. Y., Zhang, S. H., Yang, T. S., Zhang, Y. F., Chen, J., Wu, Q., Liu, M. K., 2023. Long-period astronomical forcing of climatic and biological evolution during the late Paleozoic icehouse-to-greenhouse transition. Earth-Science Reviews, 240: 104402. https://doi.org/10.1016/j.earscirev.2023.104402
- Liu, Y., Li, Y. C., Hou, M. C., Shen, J., Algeo, T. J., Fan, J. X., Zhou, X. L., Chen, Q., Sun, Z. Y., Li, C., 2023. Terrestrial rather than volcanic mercury inputs to the Yangtze Platform (South China) during the Ordovician-Silurian transition. Global and Planetary Change, 104023. https://doi.org/10.1016/j.gloplacha.2022.104023
- Fang, Q., Wu, H. C., Shen, S. Z., Fan, J. X., Hinnov, L. A., Yuan, D. X., Zhang, S. H., Yang, T. S., Chen, J., Wu, Q. 2022. Astronomically paced climate evolution during the Late Paleozoic icehouse-to-greenhouse transition. Global and Planetary Change, 213: 103822. https://doi.org/10.1016/j.gloplacha.2022.103822
- Yang, S. C., Hu, W. X.*, Fan, J. X., Deng, Y. Y., 2022. New geochemical identification fingerprints of volcanism during the Ordovician-Silurian transition and its implications for biological and environmental evolution. Earth-Science Reviews, 228: 104016.
- Jiang, L., Cai, C.F., Xiang, L., Fan, J.X., Li, K.K., Cai, L.L., Algeo, T.J., Zhang, F.F., 2022. Kerogen-specific isotope variations during the end-Permian mass extinction in South China. Earth-Science Reviews, 226: 103912. https://doi.org/10.1016/j.earscirev.2021.103912
- Yang, S. C., Hu, W. X., Wang, X. L., Fan, J. X., 2021. Nitrogen isotope evidence for a redox-stratified ocean and eustasy-driven environmental evolution during the Ordovician–Silurian transition. Global and Planetary Change, 207: 103682. https://doi.org/10.1016/j.gloplacha.2021.103682.
- Li, C., Zhang, J. P., Li, W. J., Botting, J., Chen, Q., Fan, J. X., Zhang, Y. D., 2021. Multiple glacio-eustatic cycles and associated environmental changes through the Hirnantian (Late Ordovician) in South China. Global and Planetary Change, 207: 103668.
- Li, N., Li, C., Algeo, T. J., Cheng, M., Jin, C.S., Zhu, G.Y., Fan, J.X., Sun, Z.Y., 2021. Redox changes in the outer Yangtze Sea (South China) through the Hirnantian Glaciation and their implications for the end-Ordovician biocrisis. Earth-Science Reviews, 212: 103443. https://doi.org/10.1016/j.earscirev.2020.103443
- Liu, Y., Li, C., Fan, J.X., Peng, P.A., Algeo, T.J., 2020. Elevated marine productivity triggered nitrogen limitation on the Yangtze Platform (South China) during the Ordovician-Silurian transition. Palaeogeography, Palaeoclimatology, Palaeoecology, 554: 109833. https://doi.org/10.1016/j.palaeo.2020.109833
- Na Li, Chao Li*, Junxuan Fan, Thomas J. Algeo, Detian Yan, Guangyou Zhu, Shiyong Wu, Shida Tang, Meng Cheng, Chengsheng Jin, 2019. Sulfate-controlled marine euxinia in the semi-restricted inner Yangtze Sea (South China) during the Ordovician-Silurian transition. Palaeogeography, Palaeoclimatology, Palaeoecology, 534: 109281.
- Zhanhong Liu, Thomas J. Algeo*, Xusheng Guo, Junxuan Fan*, Xuebin Du, Yongchao Lu, 2017. Paleo-environmental cyclicity in the Early Silurian Yangtze Sea (South China): Tectonic or glacio-eustatic control? Palaeogeography, Palaeoclimatology, Palaeoecology, 466: 59-76.https://doi.org/10.1016/j.palaeo.2016.11.007
3. 地质历史中长尺度气候与环境演化
Xia, Z. G.1, Li, S. L.1, Hu, Z. Y., Bialik, O., Chen, T. Y., Weldeghebriel, M. F., Fan, Q. S., Fan, J. X., Wang, X. D., An, S. C., Zhang, F. F., Xu, H. R., Chen, J. Y., Ji, Z. H., Shen, S. Z., Lowenstein, T. K.*, Li, W. Q.*, 2024. The evolution of Earth’s surficial Mg cycle over the past 2 billion years. Science Advances, 10(9): eadj5474.
4. 地学大数据、全球平台、知识图谱、数据挖掘
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- Hou, C. B.1, Lin, X. Y. 1, Huang, H. H. 1, Xu, S., Fan, J. X., Shi, Y. K.*, Lv, H. R.*, 2023. Fossil image identification using deep learning ensembles of data augmented multiviews. Methods in Ecology and Evolution, 14(12): 3020-3034. http://dx.doi.org/10.1111/2041-210X.14229
- Huang, H. H., Shi, Y. K.*, Chen, Q.(陈秦), Xu, H. Q., Song, S. C., Shi, Y. J., Shen, F. R., Fan, J. X. 2023. An image dataset of fusulinid foraminifera generated with the aid of deep learning. Geoscience Data Journal. https://doi.org/10.1002/gdj3.215
- Lu, Z. B., Fan, J. X.*, Wade, B. S., Pearson, P. N., Shi, Y. K., Qian, C., Xue, K., Yang, J., Shi, Y. J., Lai, M. C., 2026. Graph-Optimized Graphic Correlation: an automated framework for combining stratigraphical data. Lethaia, 60(1): 1-16. https://doi.org/10.18261/let.60.1.3.
- Chu, T. Y.1, Huang, H. H.1, Fan, J. X.*, Deng, Y. Y., Xu, T., Qian, C., Xue, K., Sheets, H. D., Stephenson, M. H., Shi, Y. K., Hou, X. D., 2025. HORSE: Harmonize regional and global stratigraphic records through horizon sequencing. Palaeogeography, Palaeoclimatology, Palaeoecology, 670: 112976. https://doi.org/10.1016/j.palaeo.2025.112976
- Lu, Z. B., Fan, J. X.*, Wade, B. S., Ogg, J., Alegret, L., Sadler, P. M., Stephenson, M. H., Shi, Y. K., Qian, C., Xue, K., Fang, P. Y., 2025. Improving the temporal resolution of middle Eocene–late Oligocene foraminiferal biomagneto-chronology: Insights from CONOP and chronologic significance of biotic events. Palaeogeography, Palaeoclimatology, Palaeoecology, 669: 112929. https://doi.org/10.1016/j.palaeo.2025.112929
- Shen, H. X.1, Xu, Q.1, Yuan, W. W.*, Peng, Y. J., Fan, J. X.*, 2026. Systematics and quantitative morphometrics of Ordovician trilobites from the Qilian Mountains, North China: New species and palaeobiogeographic Implications. Palaeoworld, 201052. https://doi.org/10.1016/j.palwor.2025.201052
- Sun, Z. Y.*, Štorch, P., Fan, J. X.*, Melchin, M. J., Suyarkova, A., 2022. Lower Aeronian (Llandovery, Silurian) graptolites of the genera Rastrites and Stavrites: systematics, biostratigraphy and palaeobiogeography. Papers in Palaeontology, e1429. DOI: 10.1002/spp2.1429
- Chen, Z.Y., Männik, P., Fan, J.X., Wang, C.Y., Chen, Q., Sun, Z.Y., Chen, D.Y., Li, C., 2021. Age of the Silurian Lower Red Beds in South China: Stratigraphical evidence from the Sanbaiti section. Journal of Earth Science, 32(3): 524-533. https://doi.org/10.1007/s12583-020-1350-6
- Wang, X.D.*, Hu, K.Y.*, Shi, Y.K.*, Chen, J.T., Yang, S.R., Ye, X.Y., Li, X.M., Song, Y.F, Chen, B., Sheng, Q.Y., Chang, X.L., Zhang, Y.C., Fan, J.X., Shen, S.Z., 2021. The missing upper Carboniferous in the Cimmerian Continent: A critical review. Earth-Science Reviews, 217: 103627. https://doi.org/10.1016/j.earscirev.2021.103627
- Shen, S.Z.*, Yuan, D.X.*, Henderson, C.M., Wu, Q., Zhang, Y.C., Zhang, H., Mu, L., Ramezani, J., Wang, X.D., Lambert L.L., Erwin, D.H., Hearst, J.M., Xiang, L., Chen, B., Fan, J.X., Wang, Y., Wang, W.Q., Qi, Y.P., Chen, J., Qie, W.K., Wang, T.T., 2020. Progress, problems and prospects: An overview of the Guadalupian Series of South China and North America. Earth-Science Reviews, 211: 103412. https://doi.org/10.1016/j.earscirev.2020.103412
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- Sun, Z. Y., Chen, H., Lang, X. G., Zhang, B. L., Chen, Q., Zhao, K., Zhu, S. X., Zhao, F. Q., Liang, F., Liu, C. Y., Fan, J. X.*, 2025. Mechanisms for initiation and termination of extraordinarily high total organic carbon in the Longmaxi Formation, Yangtze Platform, South China. Marine and Petroleum Geology, 182: 107588. https://doi.org/10.1016/j.marpetgeo.2025.107588
- Sun, Z. Y., Chen, H., Lang, X. G., Zhang, B. L., Chen, Q., Zhao, K., Zhu, S. X., Zhao, F. Q., Liang, F., Liu, C. Y., Fan, J. X.*, 2025. Mechanisms for initiation and termination of extraordinarily high total organic carbon in the Longmaxi Formation, Yangtze Platform, South China. Marine and Petroleum Geology, 182: 107588.
- Sun, Z. Y.*, Melchin, M. J., Štorch, P., Chen, Q., Zhao, F.Q., Fan, J. X.*, 2024. High-resolution integrated stratigraphy of Upper Ordovician to lower Silurian strata: applications to black shale drill cores in South China. Newsletters on Stratigraphy, 57(4): 445-474.